Class PopupPRPlistSelector

java.lang.Object
  |
  +--PopupPRPlistSelector

All Implemented Interfaces:

java.awt.event.ActionListener, java.util.EventListener, java.awt.event.ItemListener, java.awt.event.WindowListener

public class PopupPRPlistSelector

extends java.lang.Object

implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener

This class creates and displays a popup window to select samples.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government and Djamel Medjahed (SAIC-Frederick). As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file.

Version:

$Date: 2002/10/14 20:17:17 $ $Revision: $

Author:

P. Lemkin (NCI), Djamel Medjahed (SAIC), NCI-Frederick, Frederick, MD

See Also:

ProtPlot Home

This work was derived from prpxplorer under the Mozilla 1.1 Open Source Public License by Peter Lemkin of the National Cancer Institute, an agency of the United States Government subject to the limitations noted in the accompanying LEGAL file. See licence info on http://prpxplorer.sourceforge.org/

Field Summary

boolean	allowSetsFlag Flag is true if may set multiple samples else enforce single sample
private java.awt.Checkbox	allowXYsetsCheckBox allow XY sets (else single) samples Checkbox
private java.awt.Panel	checkBoxPanel
private java.awt.Button	clearAllButton "Clear all" window button
private java.awt.Button	closeButton close window button
private java.awt.Panel	controlPanel
boolean	ok pressed close and the proper number of samples expected was set
private int	oldSample old Sample if selecting a single sample (-1 if none)
private boolean[]	oldSampleList old list of samples [0:oldNlist-1]
private static ProtPlot	prp
private java.awt.Checkbox	prpListANDCheckBox select BOTH family and Checkbox
private java.awt.Frame	prpListFrame Frame of name checkboxes
private java.awt.Checkbox[]	prpListNameCheckbox [0:nFamilies-1] checkboxes
boolean[]	sampleList list of samples in the expression list of of samples [0:prp.nPRPs-1]
static int	SEL_CUR_SAMPLE Select current sample
static int	SEL_EP_SAMPLES Select EP sample
static int	SEL_X_SAMPLE Select Y sample or sample set
static int	SEL_Y_SAMPLE Select Y sample or sample set
int	selSample new selected sample if not -1
private int	selType
private java.awt.Button	setAllButton "Set all" window button
private java.awt.Button	setCancerButton "Set 'cancer'" window button
private java.awt.Button	setNormalButton "Set 'normal'" window button
private java.awt.Button	setPrecancerButton "Set 'precancer'" window button
private static ShowScatterPlotPopup	spp

Constructor Summary

(package private)

PopupPRPlistSelector(ProtPlot prP, ShowScatterPlotPopup spP, int selType, int curSample, boolean[] curSampleList, boolean allowSetsFlag) PopupPRPlistSelector() - popup selector

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) actionPerformed() - Handle button clicks
void	itemStateChanged(java.awt.event.ItemEvent e) itemStateChanged() - handle item state checkbox selectors.
void	quit() quit() - kill this frame
void	saveSamplesList() saveSamplesList() - Save the save list back into the PRP DB
void	setGroupButtonsEnable(boolean flag) setGroupButtonsEnable() - set the enable state of the sample assignement buttons: "Set all", "Clear all", "Set normal", "Set precancer", "Set cancer"
void	setProteinsPerSampleScodeLabels() setProteinsPerSampleScodeLabels() - set the Scode for all checkbox labels.
void	windowActivated(java.awt.event.WindowEvent e)
void	windowClosed(java.awt.event.WindowEvent e)
void	windowClosing(java.awt.event.WindowEvent e) windowClosing() - close down the window.
void	windowDeactivated(java.awt.event.WindowEvent e)
void	windowDeiconified(java.awt.event.WindowEvent e)
void	windowIconified(java.awt.event.WindowEvent e)
void	windowOpened(java.awt.event.WindowEvent e)

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Field Detail

prp

private static ProtPlot prp

spp

private static ShowScatterPlotPopup spp

SEL_CUR_SAMPLE

public static final int SEL_CUR_SAMPLE

Select current sample

SEL_X_SAMPLE

public static final int SEL_X_SAMPLE

Select Y sample or sample set

SEL_Y_SAMPLE

public static final int SEL_Y_SAMPLE

Select Y sample or sample set

SEL_EP_SAMPLES

public static final int SEL_EP_SAMPLES

Select EP sample

prpListFrame

private java.awt.Frame prpListFrame

Frame of name checkboxes

checkBoxPanel

private java.awt.Panel checkBoxPanel

controlPanel

private java.awt.Panel controlPanel

allowXYsetsCheckBox

private java.awt.Checkbox allowXYsetsCheckBox

allow XY sets (else single) samples Checkbox

prpListANDCheckBox

private java.awt.Checkbox prpListANDCheckBox

select BOTH family and Checkbox

prpListNameCheckbox

private java.awt.Checkbox[] prpListNameCheckbox

[0:nFamilies-1] checkboxes

setAllButton

private java.awt.Button setAllButton

"Set all" window button

clearAllButton

private java.awt.Button clearAllButton

"Clear all" window button

setNormalButton

private java.awt.Button setNormalButton

"Set 'normal'" window button

setPrecancerButton

private java.awt.Button setPrecancerButton

"Set 'precancer'" window button

setCancerButton

private java.awt.Button setCancerButton

"Set 'cancer'" window button

closeButton

private java.awt.Button closeButton

close window button

selType

private int selType

oldSample

private int oldSample

old Sample if selecting a single sample (-1 if none)

oldSampleList

private boolean[] oldSampleList

old list of samples [0:oldNlist-1]

ok

public boolean ok

pressed close and the proper number of samples expected was set

selSample

public int selSample

new selected sample if not -1

sampleList

public boolean[] sampleList

list of samples in the expression list of of samples [0:prp.nPRPs-1]

allowSetsFlag

public boolean allowSetsFlag

Flag is true if may set multiple samples else enforce single sample

Constructor Detail

PopupPRPlistSelector

PopupPRPlistSelector(ProtPlot prP,
                     ShowScatterPlotPopup spP,
                     int selType,
                     int curSample,
                     boolean[] curSampleList,
                     boolean allowSetsFlag)

PopupPRPlistSelector() - popup selector

Parameters:

prP - is instance of ProtPlot

spP - is instance of ShowScatterPlotPopup

selType - is type of selection: SEL_CUR_SAMPLE, SEL_X_SAMPLE, SEL_Y_SAMPLE, SEL_LISTOF_SAMPLES

curSample - is the current sample # if using a single sample

curSampleList - is the list of current samples # if using multiple samples

allowSetsFlag - is true if may set multiple samples else enforce single sample

Method Detail

setProteinsPerSampleScodeLabels

public void setProteinsPerSampleScodeLabels()

setProteinsPerSampleScodeLabels() - set the Scode for all checkbox labels. The Scode of sample i is 'S' if the nbrProteins[i] >= thresholdSproteins

setGroupButtonsEnable

public void setGroupButtonsEnable(boolean flag)

setGroupButtonsEnable() - set the enable state of the sample assignement buttons: "Set all", "Clear all", "Set normal", "Set precancer", "Set cancer"

Parameters:

flag - to set all of these buttons.

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent e)

itemStateChanged() - handle item state checkbox selectors. computes the prp.useClasBits.

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

actionPerformed() - Handle button clicks

Specified by:

actionPerformed in interface java.awt.event.ActionListener

saveSamplesList

public void saveSamplesList()

saveSamplesList() - Save the save list back into the PRP DB

quit

public void quit()

quit() - kill this frame

windowClosing

public void windowClosing(java.awt.event.WindowEvent e)

windowClosing() - close down the window.

Specified by:

windowClosing in interface java.awt.event.WindowListener

Parameters:

e - is WindowEvent when close

windowClosed

public void windowClosed(java.awt.event.WindowEvent e)

Specified by:

windowClosed in interface java.awt.event.WindowListener

windowOpened

public void windowOpened(java.awt.event.WindowEvent e)

Specified by:

windowOpened in interface java.awt.event.WindowListener

windowActivated

public void windowActivated(java.awt.event.WindowEvent e)

Specified by:

windowActivated in interface java.awt.event.WindowListener

windowDeactivated

public void windowDeactivated(java.awt.event.WindowEvent e)

Specified by:

windowDeactivated in interface java.awt.event.WindowListener

windowDeiconified

public void windowDeiconified(java.awt.event.WindowEvent e)

Specified by:

windowDeiconified in interface java.awt.event.WindowListener

windowIconified

public void windowIconified(java.awt.event.WindowEvent e)

Specified by:

windowIconified in interface java.awt.event.WindowListener