Class GetListOfPRPs

java.lang.Object
  |
  +--GetListOfPRPs

public class GetListOfPRPs

extends java.lang.Object

Class GetListOfPRPs.java - read list of PRP files and create arrays of PRP file names and PRP names without the '.prp' and map '_' to ' '. This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government and Djamel Medjahed (SAIC-Frederick). As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file.

Version:

$Date: 2002/10/14 20:17:17 $ $Revision: $

Author:

P. Lemkin (NCI), Djamel Medjahed (SAIC), NCI-Frederick, Frederick, MD

See Also:

ProtPlot Home

This work was derived from MAExplorer under the Mozilla 1.1 Open Source Public License by Peter Lemkin of the National Cancer Institute, an agency of the United States Government subject to the limitations noted in the accompanying LEGAL file. See licence info on http://maexplorer.sourceforge.org/

Field Summary

int	nPRPs # of files read
private ProtPlot	prp instance of ProtPlot
java.lang.String	prpEndsWith optional end of file name to restrict which files are read
java.lang.String[]	prpFileNames List of PRP file names [0:nPRPs-1]
java.lang.String[]	prpNames List of PRP names [0:nPRPs-1]
private UtilPRP	util instance of UtilPRP

Constructor Summary

(package private)

GetListOfPRPs(ProtPlot prp, java.lang.String prpEndsWith, java.lang.String msg) GetListOfPRPs() - constructor

Method Summary

boolean	addPRPfile(java.lang.String prpFileStr, java.lang.String prpEndsWith) addPRPfile() - Add prpFile to PRP database
boolean	GetListOfPRPsFile(java.lang.String msg) GetListOfPRPsFile() - read list of PRP files into data structure If prpEndsWith is not null then build DB from files ending in prpEndsWith, else build it from files ending in ".prp".

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Field Detail

prp

private ProtPlot prp

instance of ProtPlot

util

private UtilPRP util

instance of UtilPRP

prpEndsWith

public java.lang.String prpEndsWith

optional end of file name to restrict which files are read

nPRPs

public int nPRPs

# of files read

prpFileNames

public java.lang.String[] prpFileNames

List of PRP file names [0:nPRPs-1]

prpNames

public java.lang.String[] prpNames

List of PRP names [0:nPRPs-1]

Constructor Detail

GetListOfPRPs

GetListOfPRPs(ProtPlot prp,
              java.lang.String prpEndsWith,
              java.lang.String msg)

GetListOfPRPs() - constructor

Parameters:

prp - is instance of ProtPlot

prpEndsWith - is an OPTIONAL string to restrict which files are read if this is not null. E.g. "_tot.prp" will only read files ending in "_tot.prp", etc.

msg - to use while reading

Method Detail

addPRPfile

public boolean addPRPfile(java.lang.String prpFileStr,
                          java.lang.String prpEndsWith)

addPRPfile() - Add prpFile to PRP database

Parameters:

prpFile - is the prot file name

prpEndsWith - is an OPTIONAL string to restrict which files are read if this is not null. E.g. "_tot.prp" will only read files ending in "_tot.prp", etc.

GetListOfPRPsFile

public boolean GetListOfPRPsFile(java.lang.String msg)

GetListOfPRPsFile() - read list of PRP files into data structure If prpEndsWith is not null then build DB from files ending in prpEndsWith, else build it from files ending in ".prp".

Parameters:

msg - to display while reading file.