There are two versions of the ProtPlot program is available on the TMAP server server http://TMAP.sourceforge.net/ The first is the installer version that you download from the Web server. The second is the possibly latest version that you update by having ProtPlot copy the ProtPlot.jar file from the Web server using the (File | Update | Update ProtPlot program) menu command. After you do the update, you need to restart ProtPlot to use it. Until futher notice, TMAP is to be considered beta-level code until it is officially released. This means that there may be some functionality not fully implemented, that works incorrectly, or that has changed. New commands and functionality are in the process of being added. Please report problems and suggestions to us. 1. Full download installation TMAP version 0.40.1 Revised: 08-26-2004 2. Update TMAP program (TMAP.jar) version 0.40.1 Revised: 08-26-2004